PDB ID 5WSV     CHAIN A
Protein name Calmodulin
Uniprot Accession P62158
The number of similar proteins 282
The number of binding states 44
The number of binding partners 36

Molecule viewer


Only interaction residues
#binding
partners
  >9
  8
  7
  6
  5
  4
  3
  2
  1
  0

Sequence information

1   GPGSMADQLT   EEQIAEFKEA   FSLFDKDGDG   TITTKELGTV   MRSLGQNPTE   50
51   AELQDMINEV   DADGNGTIDF   PEFLTMMARK   MKDTDSEEEI   REAFRVFDKD   100
101   GNGYISAAEL   RHVMTNLGEK   LTDEEVDEMI   READIDGDGQ   VNYEEFVQMM   150
151   T           200

Variants

Residue AA Source dbSNP Clinical
Significance
Allele
Frequency
(> 0.0001)
Disease name
23_GLY GLU 8.3kJPN
chr10:5567119
-
- 0.0001 -
29_THR PRO ClinVar
chr14:90867656
rs1057521851
Likely pathogenic - not provided [MedGen:CN517202]
29_THR SER 8.3kJPN
chr10:5567136
-
- 0.0001 -
31_GLU GLN gnomAD
chr10:5567142
rs2231420
- 0.00532811 -
31_GLU GLN 8.3kJPN
chr10:5567142
rs2231420
- 0.0341 -
51_MET VAL 8.3kJPN
chr10:5567202
-
- 0.0001 -
53_ASN ILE ClinVar
chr14:90867729
rs267607276
Likely pathogenic - Catecholaminergic polymorphic ventricular tachycardia 4|Catecholaminergic polymorphic ventricular tachycardia 1 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286|MONDO:MONDO:0011484,MedGen:C1631597,OMIM:604772,Orphanet:3286]
61_GLY SER gnomAD
chr10:5567232
rs550418190
- 0.000502304 -
66_PRO SER gnomAD
chr10:5567247
rs75808734
- 0.000394542 -
89_PHE LEU ClinVar
chr14:90870295
rs730882253
Likely pathogenic - Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]
89_PHE LEU ClinVar
chr2:47389442
-
Likely pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
90_ARG HIS 8.3kJPN
chr10:5567320
rs776439000
- 0.0019 -
93_ASP ALA ClinVar
chr19:47111841
rs1060502608
Pathogenic - Long QT syndrome 1|not provided [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768|MedGen:C3661900]
95_ASP VAL ClinVar
chr2:47388996
rs730882254
Pathogenic - Long QT syndrome 15|not provided|Long QT syndrome 1 [MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768|MedGen:C3661900|MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
95_ASP HIS ClinVar
chr19:47112103
rs1060502607
Pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
95_ASP TYR ClinVar
chr2:47388997
rs1573214371
Pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
95_ASP TYR ClinVar
chr14:90870723
-
Pathogenic - Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]; Catecholaminergic polymorphic ventricular tachycardia 4 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286]
96_GLY SER 8.3kJPN
chr10:5567337
rs190000968
- 0.0002 -
97_ASN SER ClinVar
chr14:90870730
rs267607277
Pathogenic/Likely pathogenic - Catecholaminergic polymorphic ventricular tachycardia 4|Catecholaminergic polymorphic ventricular tachycardia 1|Long QT syndrome 14 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286|MONDO:MONDO:0011484,MedGen:C1631597,OMIM:604772,Orphanet:3286|MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]; Catecholaminergic polymorphic ventricular tachycardia 4|Catecholaminergic polymorphic ventricular tachycardia|Cardiovascular phenotype [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286|MONDO:MONDO:0017990,MedGen:C5574922,OMIM:PS604772,Orphanet:3286|MedGen:CN230736]
97_ASN SER ClinVar
chr2:47388990
rs398124647
Pathogenic - Long QT syndrome 1|Long QT syndrome 15|Long QT syndrome [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768|MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768|MONDO:MONDO:0002442,MeSH:D008133,MedGen:C0023976]
97_ASN ILE ClinVar
chr2:47388990
rs398124647
Pathogenic - Long QT syndrome 1|Long QT syndrome 15 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768|MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768]
104_GLU LYS ClinVar
chr14:90870750
rs1057523130
Likely pathogenic - not provided [MedGen:CN517202]
104_GLU GLN ClinVar
chr2:47388970
-
Likely pathogenic - Long QT syndrome 15 [MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768]
113_GLY ARG ClinVar
chr2:47388943
rs2103823712
Pathogenic - SUDDEN INFANT DEATH SYNDROME [EFO:EFO_0005303,MeSH:D013398,MedGen:C0038644,OMIM:272120]
120_GLU LYS 8.3kJPN
chr10:5567409
-
- 0.0001 -
126_ARG TRP gnomAD
chr10:5567427
rs754327442
- 0.000119868 -
128_ALA VAL 8.3kJPN
chr10:5567434
rs752809700
- 0.0002 -
129_ASP GLY ClinVar
chr14:90870826
rs730882252
Pathogenic/Likely pathogenic - Long QT syndrome 14|not provided [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768|MedGen:C3661900]
129_ASP GLY ClinVar
chr19:47112206
rs1599759554
Pathogenic - Long QT syndrome 16 [MONDO:MONDO:0032915,MedGen:C5394068,OMIM:618782]
129_ASP GLY ClinVar
chr2:47388894
rs1573214163
Likely pathogenic - Long QT syndrome 15|Long QT syndrome 1 [MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768|MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
129_ASP ASN ClinVar
chr2:47388895
rs2103823638
Pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
129_ASP GLU ClinVar
chr19:47112207
rs35617141
Pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
129_ASP ASN 8.3kJPN
chr10:5567436
rs777995357
- 0.0002 -
129_ASP GLU 8.3kJPN
chr10:5567438
rs751753306
- 0.0002 -
130_THR ARG 8.3kJPN
chr10:5567440
-
- 0.0001 -
131_ASP GLU ClinVar
chr2:47388887
rs398124648
Pathogenic - Long QT syndrome 15|Long QT syndrome 1 [MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768|MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
131_ASP GLY ClinVar
chr19:47112212
rs1057523474
Likely pathogenic - not provided [MedGen:CN517202]
131_ASP GLU ClinVar
chr19:47112213
rs1064796271
Pathogenic - not provided [MedGen:CN517202]
131_ASP ASN ClinVar
chr14:90870831
rs1595102640
Pathogenic - Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]; Catecholaminergic polymorphic ventricular tachycardia 4 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286]
131_ASP VAL ClinVar
chr14:90870832
rs1887113791
Pathogenic - Catecholaminergic polymorphic ventricular tachycardia 4 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286]; Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]
131_ASP GLY ClinVar
chr2:47388888
rs1687164164
Pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
131_ASP GLY ClinVar
chr14:90870832
rs1887113791
Pathogenic - Catecholaminergic polymorphic ventricular tachycardia 4 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286]; Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]
131_ASP TYR ClinVar
chr2:47388889
rs2103823612
Pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
132_GLY GLU ClinVar
chr14:90870835
rs1555366045
Likely pathogenic - Catecholaminergic polymorphic ventricular tachycardia 4 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286]; Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]
132_GLY SER ClinVar
chr2:47388886
rs2103823599
Likely pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
133_ASP HIS ClinVar
chr2:47388883
rs398124650
Pathogenic/Likely pathogenic - Long QT syndrome 1|Long QT syndrome 15 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768|MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768]
135_GLN PRO ClinVar
chr2:47388876
rs398124649
Pathogenic/Likely pathogenic - Long QT syndrome 1|Long QT syndrome 15 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768|MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768]
137_ASN LYS ClinVar
chr2:47388869
rs1553431702
Pathogenic - Long QT syndrome 15 [MONDO:MONDO:0014550,MedGen:C4015695,OMIM:616249,Orphanet:101016,Orphanet:768]
139_GLU VAL ClinVar
chr14:90870856
rs1064793078
Likely pathogenic - not provided [MedGen:CN517202]
140_GLU GLY ClinVar
chr19:47112382
rs1555814427
Likely pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
140_GLU LYS ClinVar
chr19:47112238
rs1599759598
Pathogenic - Long QT syndrome 16|Long QT syndrome 1 [MONDO:MONDO:0032915,MedGen:C5394068,OMIM:618782|MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
140_GLU GLY ClinVar
chr14:90871033
rs1887120112
Pathogenic - Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]
140_GLU VAL ClinVar
chr14:90871033
rs1887120112
Pathogenic - Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]
140_GLU ASP ClinVar
chr2:47387942
rs2103821507
Likely pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
141_PHE LEU ClinVar
chr14:90871037
rs199744595
Pathogenic - Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]
141_PHE LEU ClinVar
chr14:90871035
rs1085307479
Pathogenic - not provided|Long QT syndrome 14 [MedGen:C3661900|MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]; Catecholaminergic polymorphic ventricular tachycardia 4 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286]
141_PHE LEU ClinVar
chr14:90871037
rs199744595
Pathogenic - Long QT syndrome 14 [MONDO:MONDO:0014548,MedGen:C4015671,OMIM:616247,Orphanet:101016,Orphanet:768]; Catecholaminergic polymorphic ventricular tachycardia 4 [MONDO:MONDO:0013966,MedGen:C3554047,OMIM:614916,Orphanet:3286]
144_MET ARG ClinVar
chr2:47387931
rs1558693760
Likely pathogenic - Long QT syndrome 1 [MONDO:MONDO:0100316,MedGen:C4551647,OMIM:192500,Orphanet:101016,Orphanet:768]
144_VAL MET gnomAD
chr10:5567481
rs530831313
- 0.000136752 -
(Powered by wupsivus)

Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.