PDB ID 5HXB     CHAIN Z
Protein name Protein cereblon
Uniprot Accession Q96SW2
The number of similar proteins 21
The number of binding states 7
The number of binding partners 7

Coloring

Unicolor (beige)

The number of binding partners

Group

Binding
state		 Binding partners
5HXB (CHAIN: Z)
1 Q16531   P15170  
2 Q16531  
3 Q16531   O60885  
4 6H0F   Q13422  
5 Q16531   Q9BU19  
6 Q16531   P48729  
7 Q9UJQ4   8U15  

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Molecule viewer


Only interaction residues
#binding
partners
  6
  5
  4
  3
  2
  1
  0

Sequence information

1   GSMEAKKPNI   INFDTSLPTS   HTYLGADMEE   FHGRTLHDDD   SCQVIPVLPQ   50
51   VMMILIPGQT   LPLQLFHPQE   VSMVRNLIQK   DRTFAVLAYS   NVQEREAQFG   100
101   TTAEIYAYRE   EQDFGIEIVK   VKAIGRQRFK   VLELRTQSDG   IQQAKVQILP   150
151   ECVLPSTMSA   VQLESLNKCQ   IFPSKPVSRE   DQCSYKWWQK   YQKRKFHCAN   200
201   LTSWPRWLYS   LYDAETLMDR   IKKQLREWDE   NLKDDSLPSN   PIDFSYRVAA   250
251   CLPIDDVLRI   QLLKIGSAIQ   RLRCELDIMN   KCTSLCCKQC   QETEITTKNE   300
301   IFSLSLCGPM   AAYVNPHGYV   HETLTVYKAC   NLNLIGRPST   EHSWFPGYAW   350
351   TVAQCKICAS   HIGWKFTATK   KDMSPQKFWG   LTRSALLPTI   PDTEDEISPD   400
401   KVILCL           450

Variants

Residue AA Source dbSNP Clinical
Significance
 Allele
Frequency
(> 0.0001)		 Disease name
54_PRO LEU 8.3kJPN
chr3:3216860 		-
- 0.0001 -
60_LEU VAL 8.3kJPN
chr3:3215942 		-
- 0.0001 -
79_GLN TER ClinVar
chr3:3215885 		rs377356443
Likely pathogenic - not provided [MedGen:C3661900]
89_MET ILE 8.3kJPN
chr3:3215853 		rs760055652
- 0.0005 -
111_ARG GLN 8.3kJPN
chr3:3215788 		rs151127854
- 0.0001 -
127_ASN SER 8.3kJPN
chr3:3214607 		rs140766922
- 0.0001 -
145_ARG TER ClinVar
chr3:3214554 		rs1302797003
Pathogenic - Intellectual disability, autosomal recessive 2|not provided [MONDO:MONDO:0011828,MedGen:C1843942,OMIM:607417,Orphanet:88616|MedGen:CN517202]
197_VAL ILE gnomAD
chr3:3209416 		rs201974649
- 0.000274679 -
203_ASN SER 8.3kJPN
chr3:3209397 		rs1021621569
- 0.0001 -
242_ARG CYS gnomAD
chr3:3197929 		rs541404259
- 0.000266527 -
264_TRP TER ClinVar
chr3:3196475 		rs1450725934
Likely pathogenic - not provided [MedGen:C3661900]
301_ILE THR 8.3kJPN
chr3:3195693 		rs758001907
- 0.0001 -
307_ARG LEU 8.3kJPN
chr3:3195675 		rs752048403
- 0.0001 -
313_ASP HIS gnomAD
chr3:3195658 		rs142337178
- 0.000103478 -
316_ASN HIS 8.3kJPN
chr3:3195649 		-
- 0.0001 -
347_ALA VAL 8.3kJPN
chr3:3194248 		-
- 0.0001 -
367_ASN ILE ClinVar
chr3:3194188 		rs1575079076
Likely pathogenic - Multiple myeloma [Human Phenotype Ontology:HP:0006775,MONDO:MONDO:0009693,MeSH:D009101,MedGen:C0026764,OMIM:254500,Orphanet:29073,Orphanet:85443]
373_ARG GLN 8.3kJPN
chr3:3194170 		rs573677293
- 0.0004 -
391_CYS ARG VAR_079409 rs797045036
LP/P - Intellectual developmental disorder, autosomal recessive 2 (MRT2) [MIM:607417]
391_CYS ARG ClinVar
chr3:3192707 		rs797045036
Likely pathogenic - Intellectual disability, autosomal recessive 2|not provided [MONDO:MONDO:0011828,MedGen:C1843942,OMIM:607417,Orphanet:88616|MedGen:C3661900]
411_PRO HIS 8.3kJPN
chr3:3192646 		-
- 0.0001 -
411_PRO SER 8.3kJPN
chr3:3192647 		-
- 0.0001 -
418_THR MET 8.3kJPN
chr3:3192625 		rs1367633045
- 0.0001 -
425_THR MET gnomAD
chr3:3192604 		rs566932471
- 0.000832073 -
442_LEU TRP 8.3kJPN
chr3:3192553 		-
- 0.0001 -
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Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.