PDB ID 1LM8     CHAIN V
Protein name Von Hippel-Lindau disease tumor suppressor
Uniprot Accession P40337
The number of similar proteins 141
The number of binding states 25
The number of binding partners 13

Molecule viewer


Only interaction residues
#binding
partners
  >9
  8
  7
  6
  5
  4
  3
  2
  1
  0

Sequence information

1   MEAGRPRPVL   RSVNSREPSQ   VIFCNRSPRV   VLPVWLNFDG   EPQPYPTLPP   50
51   GTGRRIHSYR   GHLWLFRDAG   THDGLLVNQT   ELFVPSLNVD   GQPIFANITL   100
101   PVYTLKERCL   QVVRSLVKPE   NYRRLDIVRS   LYEDLEDHPN   VQKDLERLTQ   150
151   ERIAHQRMGD           200

Variants

Residue AA Source /
dbSNP
Clinical
Significance
Allele
Frequency
(> 0.0001)
AlphaMissense
pathogenicity
Disease name
61_PRO LEU 8.3kJPN
chr3:10183713
rs746582207
- 0.0001 0.3369 -
63_LEU PRO VAR_034987
rs104893827
LP/P - 0.7414 Pheochromocytoma (PCC) [MIM:171300]
64_ARG PRO VAR_034988
rs104893826
LP/P - 0.9621 Pheochromocytoma (PCC) [MIM:171300]
65_SER LEU VAR_005672
rs5030826
LP/P - 0.9839 Von Hippel-Lindau disease (VHLD) [MIM:193300]
65_SER TRP VAR_005673
rs5030826
LP/P - 0.981 Von Hippel-Lindau disease (VHLD) [MIM:193300]
65_SER ALA VAR_034989
rs869025616
LP/P - 0.6913 Pheochromocytoma (PCC) [MIM:171300]
68_SER TRP VAR_005675
rs869025617
LP/P - 0.8354 Pheochromocytoma (PCC) [MIM:171300]
70_GLU LYS VAR_005676
rs5030802
LP/P - 0.6772 Von Hippel-Lindau disease (VHLD) [MIM:193300]
70_GLU ASP 8.3kJPN
chr3:10183741
-
- 0.0001 0.5105 -
74_VAL GLY VAR_005677
rs5030803
LP/P - 0.8853 Von Hippel-Lindau disease (VHLD) [MIM:193300]
76_PHE ILE VAR_005679
rs1559425911
LP/P - 0.9507 Von Hippel-Lindau disease (VHLD) [MIM:193300]
76_PHE LEU VAR_005680
rs1575921940
LP/P - 0.9963 Von Hippel-Lindau disease (VHLD) [MIM:193300]
76_PHE SER VAR_005681
rs730882033
LP/P - 0.9987 Von Hippel-Lindau disease (VHLD) [MIM:193300]
78_ASN HIS VAR_005682
rs869025621
LP/P - 0.9869 Von Hippel-Lindau disease (VHLD) [MIM:193300]
78_ASN SER VAR_005683
rs5030804
LP/P - 0.8815 Von Hippel-Lindau disease (VHLD) [MIM:193300]
78_ASN THR VAR_005684
rs5030804
LP/P - 0.9859 Von Hippel-Lindau disease (VHLD) [MIM:193300]
79_ARG PRO VAR_005685
rs2125125087
LP/P - 0.9926 Von Hippel-Lindau disease (VHLD) [MIM:193300]
80_SER ILE VAR_005686
rs5030805
LP/P - 0.9697 Von Hippel-Lindau disease (VHLD) [MIM:193300]
80_SER ARG VAR_005687
rs786202787
LP/P - 0.9985 Von Hippel-Lindau disease (VHLD) [MIM:193300]
80_SER ASN VAR_005688
rs5030805
LP/P - 0.9755 Pheochromocytoma (PCC) [MIM:171300]
81_PRO SER VAR_005689
rs104893829
LB/B - 0.5826 Von Hippel-Lindau disease (VHLD) [MIM:193300]
81_PRO SER gnomAD
chr3:10183772
rs104893829
- 0.000199837 0.5826 -
82_ARG PRO VAR_005690
rs794726890
LP/P - 0.9904 Von Hippel-Lindau disease (VHLD) [MIM:193300]
84_VAL LEU VAR_005692
rs5030827
LP/P - 0.9495 Von Hippel-Lindau disease (VHLD) [MIM:193300]
86_PRO ALA VAR_005693
rs398123481
LP/P - 0.9056 Von Hippel-Lindau disease (VHLD) [MIM:193300]
86_PRO LEU VAR_005694
rs730882034
LP/P - 0.9125 Von Hippel-Lindau disease (VHLD) [MIM:193300]
86_PRO ARG VAR_005695
rs730882034
LP/P - 0.9948 Von Hippel-Lindau disease (VHLD) [MIM:193300]
86_PRO SER VAR_005696
rs398123481
LP/P - 0.9898 Von Hippel-Lindau disease (VHLD) [MIM:193300]
86_PRO HIS VAR_008097
rs730882034
LP/P - 0.9971 Von Hippel-Lindau disease (VHLD) [MIM:193300]
88_TRP ARG VAR_005697
rs1553619431
LP/P - 0.999 Von Hippel-Lindau disease (VHLD) [MIM:193300]
88_TRP SER VAR_005698
rs119103277
LP/P - 0.9957 Von Hippel-Lindau disease (VHLD) [MIM:193300]
89_LEU HIS VAR_005699
rs5030807
US - 0.9889 Lung cancer
89_LEU PRO VAR_005700
rs5030807
LP/P - 0.9939 Von Hippel-Lindau disease (VHLD) [MIM:193300]
91_PHE LEU VAR_005701
rs1060503563
US - 0.9977 -
92_ASP TYR 8.3kJPN
chr3:10183805
rs587780731
- 0.0001 0.1985 -
93_GLY CYS VAR_005703
rs5030808
LP/P - 0.9881 Pheochromocytoma (PCC) [MIM:171300]
93_GLY ASP VAR_005704
rs1553619440
LP/P - 0.9966 Von Hippel-Lindau disease (VHLD) [MIM:193300]
93_GLY SER VAR_005705
rs5030808
LP/P - 0.9609 Pheochromocytoma (PCC) [MIM:171300]
96_GLN PRO VAR_005706
rs1559426089
LP/P - 0.9611 Von Hippel-Lindau disease (VHLD) [MIM:193300]
98_TYR HIS VAR_005707
rs5030809
LP/P - 0.9734 Pheochromocytoma (PCC) [MIM:171300]
100_THR ALA 8.3kJPN
chr3:10183829
rs745901803
- 0.0001 0.0875 -
101_LEU GLY VAR_005708
-
LP/P - 0.9935 Von Hippel-Lindau disease (VHLD) [MIM:193300]
101_LEU ARG VAR_005709
-
LP/P - 0.9778 Von Hippel-Lindau disease (VHLD) [MIM:193300]
104_GLY ALA VAR_005710
rs869025630
LB/B - 0.5401 -
105_THR PRO VAR_005711
rs1553619461
LP/P - 0.8165 Von Hippel-Lindau disease (VHLD) [MIM:193300]
106_GLY ASP VAR_005712
rs1446876735
US - 0.9878 Lung cancer
107_ARG PRO VAR_005713
rs193922609
LP/P - 0.9902 Von Hippel-Lindau disease (VHLD) [MIM:193300]
107_ARG GLY VAR_034991
rs397516440
LP/P - 0.8711 Pheochromocytoma (PCC) [MIM:171300]
110_HIS TYR VAR_055087
rs17855706
LB/B - 0.2923 -
111_SER CYS VAR_005714
rs1559426203
LP/P - 0.8407 Von Hippel-Lindau disease (VHLD) [MIM:193300]
111_SER ASN VAR_005715
rs869025631
LP/P - 0.9764 Von Hippel-Lindau disease (VHLD) [MIM:193300]
111_SER ARG VAR_005716
rs765978945
LP/P - 0.9988 Von Hippel-Lindau disease (VHLD) [MIM:193300]
112_TYR HIS VAR_005717
rs104893824
LP/P - 0.9843 Von Hippel-Lindau disease (VHLD) [MIM:193300]
112_TYR ASN VAR_034992
rs104893824
LP/P - 0.991 Von Hippel-Lindau disease (VHLD) [MIM:193300]
114_GLY CYS VAR_005718
rs869025636
LP/P - 0.9136 Von Hippel-Lindau disease (VHLD) [MIM:193300]
114_GLY ARG VAR_005719
rs869025636
LP/P - 0.9626 Von Hippel-Lindau disease (VHLD) [MIM:193300]
114_GLY SER VAR_005720
rs869025636
LP/P - 0.646 Von Hippel-Lindau disease (VHLD) [MIM:193300]
115_HIS TYR VAR_005722
rs5030811
LP/P - 0.9835 Von Hippel-Lindau disease (VHLD) [MIM:193300]
115_HIS GLN VAR_005723
rs864622646
LP/P - 0.9972 Von Hippel-Lindau disease (VHLD) [MIM:193300]
115_HIS ARG VAR_008098
rs5030812
LP/P - 0.9952 Von Hippel-Lindau disease (VHLD) [MIM:193300]
116_LEU VAL VAR_005724
-
LP/P - 0.2453 Von Hippel-Lindau disease (VHLD) [MIM:193300]
117_TRP CYS VAR_005725
rs727504215
LP/P - 0.9978 Von Hippel-Lindau disease (VHLD) [MIM:193300]
118_LEU PRO VAR_005726
rs5030830
LP/P - 0.9919 Von Hippel-Lindau disease (VHLD) [MIM:193300]
118_LEU ARG VAR_005727
rs5030830
LP/P - 0.9009 Von Hippel-Lindau disease (VHLD) [MIM:193300]
119_PHE LEU VAR_005728
rs1553619948
LP/P - 0.9988 Pheochromocytoma (PCC) [MIM:171300]
119_PHE SER VAR_005729
-
LP/P - 0.9979 Von Hippel-Lindau disease (VHLD) [MIM:193300]
121_ASP GLY VAR_005730
rs5030832
LP/P - 0.9798 Von Hippel-Lindau disease (VHLD) [MIM:193300]
122_ALA ILE VAR_034993
-
LP/P - 0.5976 Pheochromocytoma (PCC) [MIM:171300]
126_ASP TYR VAR_034994
rs104893831
LP/P - 0.9291 Erythrocytosis, familial, 2 (ECYT2) [MIM:263400]
128_LEU PHE VAR_005731
rs1553619956
LP/P - 0.8028 Von Hippel-Lindau disease (VHLD) [MIM:193300]
129_LEU VAL 8.3kJPN
chr3:10188242
rs369018004
- 0.0002 0.3736 -
130_VAL LEU VAR_005733
rs104893830
LP/P - 0.9499 Erythrocytosis, familial, 2 (ECYT2) [MIM:263400]
131_ASN LYS VAR_005734
rs1064794272
LP/P - 0.9924 Von Hippel-Lindau disease (VHLD) [MIM:193300]
131_ASN THR VAR_005735
-
LP/P - 0.9632 Von Hippel-Lindau disease (VHLD) [MIM:193300]
135_LEU PHE VAR_034995
rs119103278
LB/B - 0.6344 -
136_PHE SER VAR_005736
rs5030833
LP/P - 0.9958 Von Hippel-Lindau disease (VHLD) [MIM:193300]
136_PHE CYS VAR_005737
rs5030833
LP/P - 0.9929 Pheochromocytoma (PCC) [MIM:171300]
136_PHE TYR VAR_008099
rs5030833
LP/P - 0.6973 Von Hippel-Lindau disease (VHLD) [MIM:193300]
143_ASP GLU VAR_005738
rs773556807
LP/P - 0.5896 Von Hippel-Lindau disease (VHLD) [MIM:193300]
145_GLN HIS VAR_008100
rs771727849
LP/P - 0.7925 Von Hippel-Lindau disease (VHLD) [MIM:193300]
147_ILE THR VAR_034996
rs1060503555
LP/P - 0.7372 Pheochromocytoma (PCC) [MIM:171300]
149_ALA THR VAR_005740
rs587780077
LP/P - 0.8228 Von Hippel-Lindau disease (VHLD) [MIM:193300]
154_PRO LEU VAR_005741
rs1399097617
LP/P - 0.9789 Von Hippel-Lindau disease (VHLD) [MIM:193300]
155_VAL GLY VAR_005742
rs2125130449
LP/P - 0.8999 Von Hippel-Lindau disease (VHLD) [MIM:193300]
155_VAL MET VAR_008101
rs869025659
LP/P - 0.79 Von Hippel-Lindau disease (VHLD) [MIM:193300]
156_TYR CYS VAR_005743
rs397516441
LP/P - 0.8533 Pheochromocytoma (PCC) [MIM:171300]
156_TYR ASP VAR_005744
rs2125130454
LP/P - 0.9612 Von Hippel-Lindau disease (VHLD) [MIM:193300]
156_TYR ASN VAR_034997
rs2125130454
LP/P - 0.9365 Pheochromocytoma (PCC) [MIM:171300]
157_THR ILE VAR_005746
rs869025660
LP/P - 0.9812 Von Hippel-Lindau disease (VHLD) [MIM:193300]
158_LEU PRO VAR_005748
rs121913346
LP/P - 0.9948 Von Hippel-Lindau disease (VHLD) [MIM:193300]
158_LEU VAL VAR_005749
rs1559429613
LP/P - 0.9 Von Hippel-Lindau disease (VHLD) [MIM:193300]
159_LYS GLU VAR_005750
rs1575932011
LP/P - 0.9437 Von Hippel-Lindau disease (VHLD) [MIM:193300]
161_ARG GLN VAR_005751
rs730882035
LP/P - 0.871 Pheochromocytoma (PCC) [MIM:171300]
161_ARG PRO VAR_005752
rs730882035
LP/P - 0.997 Pheochromocytoma (PCC) [MIM:171300]
161_ARG GLY VAR_005753
rs5030818
LP/P - 0.9656 Von Hippel-Lindau disease (VHLD) [MIM:193300]
162_CYS PHE VAR_005754
rs397516444
LP/P - 0.9903 Von Hippel-Lindau disease (VHLD) [MIM:193300]
162_CYS ARG VAR_005755
rs1553620313
LP/P - 0.9982 Von Hippel-Lindau disease (VHLD) [MIM:193300]
162_CYS TRP VAR_005756
rs5030622
LP/P - 0.998 Von Hippel-Lindau disease (VHLD) [MIM:193300]
162_CYS TYR VAR_005757
rs397516444
LP/P - 0.9974 Von Hippel-Lindau disease (VHLD) [MIM:193300]
163_LEU PRO VAR_034998
rs28940297
LP/P - 0.9964 Renal cell carcinoma (RCC) [MIM:144700]
164_GLN ARG VAR_005758
rs267607170
LP/P - 0.9482 Von Hippel-Lindau disease (VHLD) [MIM:193300]
164_GLN HIS VAR_008102
rs1352275281
LP/P - 0.9835 Von Hippel-Lindau disease (VHLD) [MIM:193300]
166_VAL PHE VAR_005759
rs104893825
LP/P - 0.8955 Von Hippel-Lindau disease (VHLD) [MIM:193300]
166_VAL ASP VAR_008103
rs397516445
LP/P - 0.997 Von Hippel-Lindau disease (VHLD) [MIM:193300]
167_ARG GLY VAR_005760
rs5030820
LP/P - 0.9813 Von Hippel-Lindau disease (VHLD) [MIM:193300]
167_ARG GLN VAR_005761
rs5030821
LP/P - 0.8791 Pheochromocytoma (PCC) [MIM:171300]
167_ARG TRP VAR_005762
rs5030820
LP/P - 0.9317 Pheochromocytoma (PCC) [MIM:171300]
169_LEU VAL 8.3kJPN
chr3:10191512
-
- 0.0001 0.3229 -
170_VAL ASP VAR_005763
rs864321642
LP/P - 0.9961 Von Hippel-Lindau disease (VHLD) [MIM:193300]
170_VAL PHE VAR_005764
rs1553620326
LP/P - 0.9737 Von Hippel-Lindau disease (VHLD) [MIM:193300]
170_VAL GLY VAR_005765
rs864321642
LP/P - 0.9034 Von Hippel-Lindau disease (VHLD) [MIM:193300]
175_TYR ASP VAR_005766
-
LP/P - 0.987 Von Hippel-Lindau disease (VHLD) [MIM:193300]
176_ARG TRP VAR_008104
-
LP/P - 0.6419 Von Hippel-Lindau disease (VHLD) [MIM:193300]
178_LEU PRO VAR_005768
rs5030822
LP/P - 0.9954 Von Hippel-Lindau disease (VHLD) [MIM:193300]
178_LEU GLN VAR_005769
rs5030822
LP/P - 0.9901 Von Hippel-Lindau disease (VHLD) [MIM:193300]
180_ILE VAL VAR_005770
rs377715747
LP/P - 0.5969 Von Hippel-Lindau disease (VHLD) [MIM:193300]
183_SER LEU 8.3kJPN
chr3:10191555
rs5030823
- 0.0002 0.7413 -
184_LEU ARG VAR_005771
rs1064793878
LP/P - 0.9743 Von Hippel-Lindau disease (VHLD) [MIM:193300]
184_LEU PRO VAR_005772
rs1064793878
LP/P - 0.9905 Von Hippel-Lindau disease (VHLD) [MIM:193300]
186_GLU LYS VAR_005773
rs367545984
LP/P - 0.4226 Von Hippel-Lindau disease (VHLD) [MIM:193300]
188_LEU PRO VAR_005775
rs1559429824
LP/P - 0.9964 Von Hippel-Lindau disease (VHLD) [MIM:193300]
188_LEU GLN VAR_005776
rs1559429824
LP/P - 0.996 Von Hippel-Lindau disease (VHLD) [MIM:193300]
188_LEU VAL VAR_005777
rs5030824
US - 0.7768 Erythrocytosis, familial, 2 (ECYT2) [MIM:263400]
191_HIS ASP VAR_034999
rs28940301
LP/P - 0.5685 Erythrocytosis, familial, 2 (ECYT2) [MIM:263400]
192_PRO SER VAR_035000
rs28940300
LP/P - 0.9606 Erythrocytosis, familial, 2 (ECYT2) [MIM:263400]
198_LEU ARG VAR_005778
-
LP/P - 0.5842 Erythrocytosis, familial, 2 (ECYT2) [MIM:263400]
198_LEU GLN VAR_035001
rs869025667
LP/P - 0.7012 Pheochromocytoma (PCC) [MIM:171300]
200_ARG TRP VAR_005779
rs28940298
LP/P - 0.4476 Erythrocytosis, familial, 2 (ECYT2) [MIM:263400]
200_ARG TRP gnomAD
chr3:10191605
rs28940298
- 0.000210855 0.4476 -
206_ILE MET 8.3kJPN
chr3:10191625
-
- 0.0001 0.0763 -
(Powered by wupsivus)

Reference

PiSite: a database of protein interaction sites using multiple binding states in the PDB, Miho Higurashi, Takashi Ishida and Kengo Kinoshita, Nucleic Acids Research 2009 37(Database issue):D360-D364

COPYRIGHTc2008-2019 Miho Higurashi, Takashi Ishida and Kengo Kinoshita. All rights reserved.