| PDB ID | 1LM8
|
CHAIN | V |
|---|---|---|---|
| Protein name | Von Hippel-Lindau disease tumor suppressor | ||
| Uniprot Accession | P40337 | ||
| The number of similar proteins | 141 | ||
| The number of binding states | 25 | ||
| The number of binding partners | 13 | ||
Unicolor (beige)
The number of binding partners
Group
| Binding state |
Binding partners |
|---|---|
| 1LM8 (CHAIN: V) | |
| 1 |
Q15369
Q15370
|
| 2 |
Q15369
|
| 3 |
Q16878
|
| 4 |
Q15369
Q13617
|
| 5 |
Q15369
Q15370
P51531
|
| 6 |
Q15369
Q15370
O60885
|
| 7 |
Q15369
Q15370
P61964
|
| 8 |
Q15369
Q15370
Q13451
|
| 9 |
P01116
Q15369
Q15370
|
| 10 |
Q15369
Q15370
Q16665
|
| 11 |
Q15369
Q15370
P10415
|
| 12 |
Q15369
Q15370
Q16878
|
| 13 |
Q15369
Q15369
Q15370
|
| 14 |
P40337
Q15369
Q15370
|
| 15 |
Q15369-2
Q15370
Q05397
|
| 16 |
P40337
Q15370
Q15370
P51531
|
| 17 |
P40337
P40337
Q15369
Q15370
|
| 18 |
P40337
Q15369
Q15369
Q15370
|
| 19 |
P40337
Q15369
Q15369
Q15370
Q15370
Q15370
P51531
|
| 20 |
P40337
P40337
Q15369
Q15369
Q15370
Q15370
Q15370
P51531
|
| 21 |
P40337
P40337
Q15369
Q15369
Q15370
Q15370
P51531
P51531
|
| 22 |
P40337
P40337
Q15369
Q15369
Q15370
P51531
P51531
P51531
|
| 23 |
P40337
P40337
Q15369
Q15369
Q15370
Q15370
P51531
P51531
P51531
|
| 24 |
P40337
P40337
Q15369
Q15369
Q15370
Q15370
Q15370
P51531
P51531
|
| 25 |
P40337
P40337
Q15369
Q15369
Q15370
Q15370
Q15370
P51531
P51531
P51531
|
|
Only interaction residues |
|
||||||||||||||||||||||
|
|
| Residue | AA | Source / dbSNP |
Clinical Significance |
Allele Frequency (> 0.0001) |
AlphaMissense pathogenicity |
Disease name | |
|---|---|---|---|---|---|---|---|
| 61_PRO | LEU |
8.3kJPN chr3:10183713 rs746582207 |
- | 0.0001 | 0.3369 | - | |
| 63_LEU | PRO |
VAR_034987
rs104893827 |
LP/P | - | 0.7414 | Pheochromocytoma (PCC) [MIM:171300] | |
| 64_ARG | PRO |
VAR_034988
rs104893826 |
LP/P | - | 0.9621 | Pheochromocytoma (PCC) [MIM:171300] | |
| 65_SER | LEU |
VAR_005672
rs5030826 |
LP/P | - | 0.9839 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 65_SER | TRP |
VAR_005673
rs5030826 |
LP/P | - | 0.981 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 65_SER | ALA |
VAR_034989
rs869025616 |
LP/P | - | 0.6913 | Pheochromocytoma (PCC) [MIM:171300] | |
| 68_SER | TRP |
VAR_005675
rs869025617 |
LP/P | - | 0.8354 | Pheochromocytoma (PCC) [MIM:171300] | |
| 70_GLU | LYS |
VAR_005676
rs5030802 |
LP/P | - | 0.6772 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 70_GLU | ASP |
8.3kJPN chr3:10183741 - |
- | 0.0001 | 0.5105 | - | |
| 74_VAL | GLY |
VAR_005677
rs5030803 |
LP/P | - | 0.8853 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 76_PHE | ILE |
VAR_005679
rs1559425911 |
LP/P | - | 0.9507 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 76_PHE | LEU |
VAR_005680
rs1575921940 |
LP/P | - | 0.9963 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 76_PHE | SER |
VAR_005681
rs730882033 |
LP/P | - | 0.9987 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 78_ASN | HIS |
VAR_005682
rs869025621 |
LP/P | - | 0.9869 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 78_ASN | SER |
VAR_005683
rs5030804 |
LP/P | - | 0.8815 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 78_ASN | THR |
VAR_005684
rs5030804 |
LP/P | - | 0.9859 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 79_ARG | PRO |
VAR_005685
rs2125125087 |
LP/P | - | 0.9926 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 80_SER | ILE |
VAR_005686
rs5030805 |
LP/P | - | 0.9697 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 80_SER | ARG |
VAR_005687
rs786202787 |
LP/P | - | 0.9985 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 80_SER | ASN |
VAR_005688
rs5030805 |
LP/P | - | 0.9755 | Pheochromocytoma (PCC) [MIM:171300] | |
| 81_PRO | SER |
VAR_005689
rs104893829 |
LB/B | - | 0.5826 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 81_PRO | SER |
gnomAD chr3:10183772 rs104893829 |
- | 0.000199837 | 0.5826 | - | |
| 82_ARG | PRO |
VAR_005690
rs794726890 |
LP/P | - | 0.9904 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 84_VAL | LEU |
VAR_005692
rs5030827 |
LP/P | - | 0.9495 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 86_PRO | ALA |
VAR_005693
rs398123481 |
LP/P | - | 0.9056 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 86_PRO | LEU |
VAR_005694
rs730882034 |
LP/P | - | 0.9125 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 86_PRO | ARG |
VAR_005695
rs730882034 |
LP/P | - | 0.9948 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 86_PRO | SER |
VAR_005696
rs398123481 |
LP/P | - | 0.9898 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 86_PRO | HIS |
VAR_008097
rs730882034 |
LP/P | - | 0.9971 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 88_TRP | ARG |
VAR_005697
rs1553619431 |
LP/P | - | 0.999 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 88_TRP | SER |
VAR_005698
rs119103277 |
LP/P | - | 0.9957 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 89_LEU | HIS |
VAR_005699
rs5030807 |
US | - | 0.9889 | Lung cancer | |
| 89_LEU | PRO |
VAR_005700
rs5030807 |
LP/P | - | 0.9939 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 91_PHE | LEU |
VAR_005701
rs1060503563 |
US | - | 0.9977 | - | |
| 92_ASP | TYR |
8.3kJPN chr3:10183805 rs587780731 |
- | 0.0001 | 0.1985 | - | |
| 93_GLY | CYS |
VAR_005703
rs5030808 |
LP/P | - | 0.9881 | Pheochromocytoma (PCC) [MIM:171300] | |
| 93_GLY | ASP |
VAR_005704
rs1553619440 |
LP/P | - | 0.9966 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 93_GLY | SER |
VAR_005705
rs5030808 |
LP/P | - | 0.9609 | Pheochromocytoma (PCC) [MIM:171300] | |
| 96_GLN | PRO |
VAR_005706
rs1559426089 |
LP/P | - | 0.9611 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 98_TYR | HIS |
VAR_005707
rs5030809 |
LP/P | - | 0.9734 | Pheochromocytoma (PCC) [MIM:171300] | |
| 100_THR | ALA |
8.3kJPN chr3:10183829 rs745901803 |
- | 0.0001 | 0.0875 | - | |
| 101_LEU | GLY |
VAR_005708
- |
LP/P | - | 0.9935 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 101_LEU | ARG |
VAR_005709
- |
LP/P | - | 0.9778 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 104_GLY | ALA |
VAR_005710
rs869025630 |
LB/B | - | 0.5401 | - | |
| 105_THR | PRO |
VAR_005711
rs1553619461 |
LP/P | - | 0.8165 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 106_GLY | ASP |
VAR_005712
rs1446876735 |
US | - | 0.9878 | Lung cancer | |
| 107_ARG | PRO |
VAR_005713
rs193922609 |
LP/P | - | 0.9902 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 107_ARG | GLY |
VAR_034991
rs397516440 |
LP/P | - | 0.8711 | Pheochromocytoma (PCC) [MIM:171300] | |
| 110_HIS | TYR |
VAR_055087
rs17855706 |
LB/B | - | 0.2923 | - | |
| 111_SER | CYS |
VAR_005714
rs1559426203 |
LP/P | - | 0.8407 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 111_SER | ASN |
VAR_005715
rs869025631 |
LP/P | - | 0.9764 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 111_SER | ARG |
VAR_005716
rs765978945 |
LP/P | - | 0.9988 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 112_TYR | HIS |
VAR_005717
rs104893824 |
LP/P | - | 0.9843 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 112_TYR | ASN |
VAR_034992
rs104893824 |
LP/P | - | 0.991 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 114_GLY | CYS |
VAR_005718
rs869025636 |
LP/P | - | 0.9136 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 114_GLY | ARG |
VAR_005719
rs869025636 |
LP/P | - | 0.9626 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 114_GLY | SER |
VAR_005720
rs869025636 |
LP/P | - | 0.646 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 115_HIS | TYR |
VAR_005722
rs5030811 |
LP/P | - | 0.9835 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 115_HIS | GLN |
VAR_005723
rs864622646 |
LP/P | - | 0.9972 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 115_HIS | ARG |
VAR_008098
rs5030812 |
LP/P | - | 0.9952 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 116_LEU | VAL |
VAR_005724
- |
LP/P | - | 0.2453 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 117_TRP | CYS |
VAR_005725
rs727504215 |
LP/P | - | 0.9978 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 118_LEU | PRO |
VAR_005726
rs5030830 |
LP/P | - | 0.9919 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 118_LEU | ARG |
VAR_005727
rs5030830 |
LP/P | - | 0.9009 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 119_PHE | LEU |
VAR_005728
rs1553619948 |
LP/P | - | 0.9988 | Pheochromocytoma (PCC) [MIM:171300] | |
| 119_PHE | SER |
VAR_005729
- |
LP/P | - | 0.9979 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 121_ASP | GLY |
VAR_005730
rs5030832 |
LP/P | - | 0.9798 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 122_ALA | ILE |
VAR_034993
- |
LP/P | - | 0.5976 | Pheochromocytoma (PCC) [MIM:171300] | |
| 126_ASP | TYR |
VAR_034994
rs104893831 |
LP/P | - | 0.9291 | Erythrocytosis, familial, 2 (ECYT2) [MIM:263400] | |
| 128_LEU | PHE |
VAR_005731
rs1553619956 |
LP/P | - | 0.8028 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 129_LEU | VAL |
8.3kJPN chr3:10188242 rs369018004 |
- | 0.0002 | 0.3736 | - | |
| 130_VAL | LEU |
VAR_005733
rs104893830 |
LP/P | - | 0.9499 | Erythrocytosis, familial, 2 (ECYT2) [MIM:263400] | |
| 131_ASN | LYS |
VAR_005734
rs1064794272 |
LP/P | - | 0.9924 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 131_ASN | THR |
VAR_005735
- |
LP/P | - | 0.9632 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 135_LEU | PHE |
VAR_034995
rs119103278 |
LB/B | - | 0.6344 | - | |
| 136_PHE | SER |
VAR_005736
rs5030833 |
LP/P | - | 0.9958 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 136_PHE | CYS |
VAR_005737
rs5030833 |
LP/P | - | 0.9929 | Pheochromocytoma (PCC) [MIM:171300] | |
| 136_PHE | TYR |
VAR_008099
rs5030833 |
LP/P | - | 0.6973 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 143_ASP | GLU |
VAR_005738
rs773556807 |
LP/P | - | 0.5896 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 145_GLN | HIS |
VAR_008100
rs771727849 |
LP/P | - | 0.7925 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 147_ILE | THR |
VAR_034996
rs1060503555 |
LP/P | - | 0.7372 | Pheochromocytoma (PCC) [MIM:171300] | |
| 149_ALA | THR |
VAR_005740
rs587780077 |
LP/P | - | 0.8228 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 154_PRO | LEU |
VAR_005741
rs1399097617 |
LP/P | - | 0.9789 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 155_VAL | GLY |
VAR_005742
rs2125130449 |
LP/P | - | 0.8999 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 155_VAL | MET |
VAR_008101
rs869025659 |
LP/P | - | 0.79 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 156_TYR | CYS |
VAR_005743
rs397516441 |
LP/P | - | 0.8533 | Pheochromocytoma (PCC) [MIM:171300] | |
| 156_TYR | ASP |
VAR_005744
rs2125130454 |
LP/P | - | 0.9612 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 156_TYR | ASN |
VAR_034997
rs2125130454 |
LP/P | - | 0.9365 | Pheochromocytoma (PCC) [MIM:171300] | |
| 157_THR | ILE |
VAR_005746
rs869025660 |
LP/P | - | 0.9812 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 158_LEU | PRO |
VAR_005748
rs121913346 |
LP/P | - | 0.9948 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 158_LEU | VAL |
VAR_005749
rs1559429613 |
LP/P | - | 0.9 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 159_LYS | GLU |
VAR_005750
rs1575932011 |
LP/P | - | 0.9437 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 161_ARG | GLN |
VAR_005751
rs730882035 |
LP/P | - | 0.871 | Pheochromocytoma (PCC) [MIM:171300] | |
| 161_ARG | PRO |
VAR_005752
rs730882035 |
LP/P | - | 0.997 | Pheochromocytoma (PCC) [MIM:171300] | |
| 161_ARG | GLY |
VAR_005753
rs5030818 |
LP/P | - | 0.9656 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 162_CYS | PHE |
VAR_005754
rs397516444 |
LP/P | - | 0.9903 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 162_CYS | ARG |
VAR_005755
rs1553620313 |
LP/P | - | 0.9982 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 162_CYS | TRP |
VAR_005756
rs5030622 |
LP/P | - | 0.998 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 162_CYS | TYR |
VAR_005757
rs397516444 |
LP/P | - | 0.9974 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 163_LEU | PRO |
VAR_034998
rs28940297 |
LP/P | - | 0.9964 | Renal cell carcinoma (RCC) [MIM:144700] | |
| 164_GLN | ARG |
VAR_005758
rs267607170 |
LP/P | - | 0.9482 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 164_GLN | HIS |
VAR_008102
rs1352275281 |
LP/P | - | 0.9835 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 166_VAL | PHE |
VAR_005759
rs104893825 |
LP/P | - | 0.8955 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 166_VAL | ASP |
VAR_008103
rs397516445 |
LP/P | - | 0.997 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 167_ARG | GLY |
VAR_005760
rs5030820 |
LP/P | - | 0.9813 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 167_ARG | GLN |
VAR_005761
rs5030821 |
LP/P | - | 0.8791 | Pheochromocytoma (PCC) [MIM:171300] | |
| 167_ARG | TRP |
VAR_005762
rs5030820 |
LP/P | - | 0.9317 | Pheochromocytoma (PCC) [MIM:171300] | |
| 169_LEU | VAL |
8.3kJPN chr3:10191512 - |
- | 0.0001 | 0.3229 | - | |
| 170_VAL | ASP |
VAR_005763
rs864321642 |
LP/P | - | 0.9961 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 170_VAL | PHE |
VAR_005764
rs1553620326 |
LP/P | - | 0.9737 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 170_VAL | GLY |
VAR_005765
rs864321642 |
LP/P | - | 0.9034 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 175_TYR | ASP |
VAR_005766
- |
LP/P | - | 0.987 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 176_ARG | TRP |
VAR_008104
- |
LP/P | - | 0.6419 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 178_LEU | PRO |
VAR_005768
rs5030822 |
LP/P | - | 0.9954 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 178_LEU | GLN |
VAR_005769
rs5030822 |
LP/P | - | 0.9901 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 180_ILE | VAL |
VAR_005770
rs377715747 |
LP/P | - | 0.5969 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 183_SER | LEU |
8.3kJPN chr3:10191555 rs5030823 |
- | 0.0002 | 0.7413 | - | |
| 184_LEU | ARG |
VAR_005771
rs1064793878 |
LP/P | - | 0.9743 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 184_LEU | PRO |
VAR_005772
rs1064793878 |
LP/P | - | 0.9905 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 186_GLU | LYS |
VAR_005773
rs367545984 |
LP/P | - | 0.4226 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 188_LEU | PRO |
VAR_005775
rs1559429824 |
LP/P | - | 0.9964 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 188_LEU | GLN |
VAR_005776
rs1559429824 |
LP/P | - | 0.996 | Von Hippel-Lindau disease (VHLD) [MIM:193300] | |
| 188_LEU | VAL |
VAR_005777
rs5030824 |
US | - | 0.7768 | Erythrocytosis, familial, 2 (ECYT2) [MIM:263400] | |
| 191_HIS | ASP |
VAR_034999
rs28940301 |
LP/P | - | 0.5685 | Erythrocytosis, familial, 2 (ECYT2) [MIM:263400] | |
| 192_PRO | SER |
VAR_035000
rs28940300 |
LP/P | - | 0.9606 | Erythrocytosis, familial, 2 (ECYT2) [MIM:263400] | |
| 198_LEU | ARG |
VAR_005778
- |
LP/P | - | 0.5842 | Erythrocytosis, familial, 2 (ECYT2) [MIM:263400] | |
| 198_LEU | GLN |
VAR_035001
rs869025667 |
LP/P | - | 0.7012 | Pheochromocytoma (PCC) [MIM:171300] | |
| 200_ARG | TRP |
VAR_005779
rs28940298 |
LP/P | - | 0.4476 | Erythrocytosis, familial, 2 (ECYT2) [MIM:263400] | |
| 200_ARG | TRP |
gnomAD chr3:10191605 rs28940298 |
- | 0.000210855 | 0.4476 | - | |
| 206_ILE | MET |
8.3kJPN chr3:10191625 - |
- | 0.0001 | 0.0763 | - |